In this paper, we review the problem of accounting for heat exchange between the flow and the flow part surfaces when creating a calculation model for modeling the workflow process of low-flow stages of a centrifugal compressor using computational fluid dynamics (CFD). The objective selected for this study was a low-flow intermediate type stage with the conditional flow coefficient Փ = 0.008 and the relative width at the impeller exit b₂/D₂ = 0.0133. We show that, in the case of modeling with widespread adiabatic wall simplification, the calculated temperature in the gaps between the impeller and the stator elements is significantly overestimated. Modeling of the working process in the flow part was carried out with a coupled heat exchanger, as well as with simplified accounting for heat transfer by setting the temperatures of the walls. The gas-dynamic characteristics of the stage were compared with the experimental data, the heat transfer influence on the disks friction coefficient was estimated, and the temperature distributions in the gaps between disks and in the flow part of the stage were analyzed. It is shown that the main principle when modeling the flow in low-flow stage is to ensure correct temperature distribution in the gaps.